Papers

Katherine Leggat-Barr, BA, Rita Ryu, MBA, MPH, Michael Hogarth, MD, Allison Stover-Fiscallini, MPH, Laura Van’t Veer, PhD, Hannah Lui Park, PhD, Tomiyuri Lewis, BA, Caroline Thompson, PhD, Alexander Borowsky, MD, Robert Hiatt, MD, PhD, Andrea LaCroix, PhD, Barbara Parker, MD, Lisa Madlensky, PhD, CGC, Arash Naeim, Mh, PhD, Laura Esserman, MD, MBA. Early ascertainment of breast cancer diagnosis comparing self-reported questionnaires and electronic health record data warehouse: The WISDOM Study. JCO Clinical Cancer Informatics 2023:7

Chen Chen, Ella T. Lifset, Yichen Han, Arkajyoti Roy, Michael Hogarth, Alison A. Moore, Emilia Farcas, Nadir Weibel. How do older adults set up voice assistants? Lessons learned from a deployment experience for older adults to set up standalone voice assistants. ACM Designing Interactive Systems Conference. July 11, 2023.

Ayers JW, Zhu Z, Poliak A, Leas EC, Dredze M, Hogarth M, Smith DM. Evaluating Artificial Intelligence Responses to Public Health Questions. JAMA Network Open. 2023 Jun 1;6(6):e2317517

Kiana Tavakoli, MD, Fritz Gerald P. Kalaw, MD, Sonali Bhanvadia, Michael Hogarth, MD, Sally Baxter, MD, MSc. Concept coverage analysis of ophthalmic infections and trauma among the standardized medical terminologies SNOMED-CT, ICD-10, and ICD-11. Ophthalmology Science. May 25, 2023.

Hogarth M, John D, Li Y, Wang-Rodriguez J, Chakladar J, Li WT, Mehta SR, Jain S, Ongkeko WM. Clinical Characteristics and Comorbidities associated with SARS-CoV-2 breakthrough infection in the University of California Healthcare Systems. Am J Med Sci. 2023 May 3:S0002-9629(23)01166-7.

Ayers JW, Poliak A, Dredze M, Leas EC, Zhu Z, Kelley JB, Faix DJ, Goodman AM, Longhurst CA, Hogarth M, Smith DM. Comparing Physician and Artificial Intelligence Chatbot Responses to Patient Questions Posted to a Public Social Media Forum. JAMA Intern Med. 2023 Apr 28:e231838.

Boussina A, Shashikumar S, Amrollahi F, Pour H, Hogarth M, Nemati S. Development & Deployment of a Real-time Healthcare Predictive Analytics Platform. medRxiv [Preprint]. 2023 Apr 11:2023.04.10.23288373.

Nakagawa K, Moukheiber L, Celi LA, Patel M, Mahmood F, Gondim D, Hogarth M, Levenson R. AI in Pathology: What could possibly go wrong? Semin Diagn Pathol. 2023 Mar;40(2):100-108.

Lenert LA, Zhu V, Jennings L, McCauley JL, Obeid JS, Ward R, Hassanpour S, Marsch LA, Hogarth M, Shipman P, Harris DR, Talbert JC. Enhancing research data infrastructure to address the opioid epidemic: the Opioid Overdose Network (O2-Net). JAMIA Open. 2022 Jun 30;5(2)

Esserman L, Eklund M, Veer LV, Shieh Y, Tice J, Ziv E, Blanco A, Kaplan C, Hiatt R, Fiscalini AS, Yau C, Scheuner M, Naeim A, Wenger N, Lee V, Heditsian D, Brain S, Parker BA, LaCroix AZ, Madlensky L, Hogarth M, Borowsky A, Anton-Culver H, Kaster A, Olopade OI, Sheth D, Garcia A, Lancaster R, Plaza M. The WISDOM study: a new approach to screening can and should be tested. Breast Cancer Res Treat. 2021 Oct;189(3):593-598. PMID: 34529196.

Tai-Seale M, Rosen R. Rosen R, Ruo B, Hogarth M, Longhurst CA, Lander L, Walker AL, Stults CD, Chan A, Mazor K, Garber L, Millen M. Implementation of Patient Engagement Tools in Electronic Health Records to Enhance Patient-Centered Communication: Protocol for Feasibility Evaluation and Preliminary Results. JMIR Res Protoc. 2021 Aug 26;10(8). PMID: 34435960.

Carlile, M, Hurt, B, Hsiao, A, Hogarth, M, Longhurst, CA, Dameff, C. Deployment of artificial intelligence for radiographic diagnosis of COVID‐19 pneumonia in the emergency department. JACEP Open. Dec. 2020; 1: 1459– 1464.

Jenks JD, Garfein RS, Zhu W, Hogarth M. Latent Tuberculosis Screening Using Electronic Health Record Data. Emerg Infect Dis. 2020 Sep;26(9):2285-2287. doi: 10.3201/eid2609.191391. PMID: 32818426.

Chin DL, Wilson MH, Trask AS, Johnson VT, Neaves BI, Gojova A, Hogarth MA, Bang H, Romano PS. Repurposing Clinical Decision Support System Data to Measure Dosing Errors and Clinician-Level Quality of Care. J Med Syst. 2020 Sep 08; 44(10):185.  PMID: 32897483.

Baxter SL, Klie AR, Radha Saseendrakumar B, Ye GY, Hogarth M. Text Processing for Detection of Fungal Ocular Involvement in Critical Care Patients: Cross-Sectional Study. J Med Internet Res. 2020 Aug 14; 22(8):e18855.  PMID: 32795984

Baxter SL, Klie AR, Saseendrakumar BR, Ye GY, Hogarth M, Nemati S. Predicting Mortality in Critical Care Patients with Fungemia Using Structured and Unstructured Data. Annu Int Conf IEEE Eng Med Biol Soc. 2020 Jul; 2020:5459-5463. doi: 10.1109/EMBC44109.2020.9175287. PMID: 33019215.

Joshua C Denny, Joni L Rutter, David B Goldstein, Anthony Philippakis, Jordan W Smoller, Gwynne Jenkins, Eric Dishman, and the California Precision Medicine Consortium. The “All of Us” Research Program. N Engl J Med. 2019 Aug 15; 381(7):668-676.

Ohno-Machado L, Kim J, Gabriel RA, Kuo GM, Hogarth, MA. Genomics and electronic health record systems. Human Molecular Genetics. 18 April 2018.

Green R, Hogarth MA, Prystowsky MB, Rashidi HH. The job market outlook for residency graduates: Clear weather ahead for the butterflies? Arch Pathol Lab Med. 2018. Apr; 142(4):435-438.

Qenam B, Kim TY, Carroll MJ, Hogarth M. Text simplification using consumer health vocabulary to generate patient-centered radiology reporting: Translation and evaluation. J Med Internet Res. 2017 Dec 18;19(12):e417.

Esserman LJ, WISDOM Study and Athena Investigators. The WISDOM Study: Breaking the deadlock in the breast cancer screening debate. NPJ Breast Cancer. 2017 Sep 13;3:34.

Jason Y Park, Toby Cornish, Michael Hogarth, Brian Jackson, and Kristen Rosati. Patient privacy and clinical laboratory data. Clin Chem. 2017. Aug; 63(8):1321-1325.

Mona Alsaffar, Peter Yellowlees, Alberto Odor, Michael Hogarth. The state of open source electronic health record projects: A software anthropology study. Journal of Internet Research (JMIR). 2017. 5(1):e6:1-10.

John W. Park, Minetta C. Liu, Douglas Yee, Christina Yau, Laura J. van 't Veer, W. Fraser Symmans, Melissa Paoloni, Jane Perlmutter, Nola M. Hylton, Michael Hogarth, Angela DeMichele, Meredith B. Buxton, A. Jo Chien, Anne M. Wallace,Judy C. Boughe, Tufia C. Haddad,Stephen Y. Chui/Kathleen A. Kemmer,Henry G. Kaplan, Minetta C. Liu/Claudine Isaacs, Rita Nanda, Debasish Tripathy, Kathy S. Albain, Kirsten K. Edmiston, Anthony D. Elias,Donald W. Northfelt,Lajos Pusztai/Stacy L. Moulder, Julie E. Lang/Rebecca K. Viscusi, David M. Euhus/Barbara B. Haley,Oamar J. Khan, William C. Wood, Michelle Melisko (UCSF), Richard Schwab (UCSD), Julia Lyandres, Sarah E. Davis, Gillian L. Hirst, Ashish Sanil, Laura J. Esserman and Donald A. Berry,on behalf of the I- SPY2 Investigators. Neratinib plus neoadjuvant therapy for high-risk breast cancer: Efficacy results from the Phase 2 randomized I-SPY2 trial.  N Engl J Med. 2016 Jul 7;375(1):11-22.

Hope S. Rugo, Olufunmilayo I. Olopade, Angela DeMichele, Christina Yau, Laura J. van ‘t Veer, Meredith B. Buxton, Michael Hogarth, Nola M. Hylton, Melissa Paoloni, Jane Perlmutter, W. Fraser Symmans, Douglas Yee, A. Jo Chien, Anne M. Wallace, Henry G. Kaplan, Judy C. Boughey/ Tufia C. Haddad, Kathy S. Albain, Minetta C. Liu/Claudine Isaacs, Qamar J. Khan, Julie E. Lang/Rebecca K. Viscusi, Lajos Pusztai/Stacy L. Moulder, Stephen Y. Chui/Kathleen A. Kemmer, Anthony D. Elias, Kirsten K. Edmiston, David M. Euhus/Barbara B. Haley, Rita Nanda, Donald W. Northfelt, Debasish Tripath, William C. Wood, Cheryl Ewing (UCSF), Richard Schwab (UCSD), Julia Lyandres, Sarah E. Davis, Gillian L. Hirst, Ashish Sanil, Donald A. Berry and Laura J. Esserman. Results from the I-SPY2 trial for high risk breast cancer: Efficacy of Valiparib/Carboplatin plus standard neoadjuvant therapy.
N Engl J Med. 2016 Jul 7;375(1):23-34.

Mahajan S, Burman P, Hogarth M. Analyzing 30-day readmission rate for heart failure using different predictive models. Stud Health Technol Inform. 2016;225:143-7.

Robert Hiatt, Caroline Tai, Douglas Blayney, Dennis Deapen, Michael Hogarth, Kenneth Kizer, Joseph Lipscomb, Jennifer Malin, Stephen, Phillips, John Santa, Deborah Schrag. Leveraging state cancer registries to measure and improve the quality of cancer care: A potential strategy for California and beyond. Journal of the National Cancer Institute (JNCI). Pre-pub online – J Natl Cancer Inst. 2015 Mar 11;107(5). Pii:djv047; doi:10.1093/jnci/djv047  

Akshay Mani, Resmi Ravindran, Soujanya Mannepalli, Daniel Vang, Paul Luciw, Michael Hogarth, Imran Khan, V.V. Krishnan. Data mining strategies to improve multiplex microbead immunoassay tolerance in a mouse model of infectious diseases. PLoS One. 2015 Jan 23;10(1):e0116262. Doi:10.1371/journal.plone/0116262

Jeremy Warner, Suzanne Maddux, Kevin Hughes, John Krauss, Peter Yu, Lawrence Shulman, Deborah Mayer, Mike Hogarth, Mark Shafarman, Allison Fiscallini, Laura Esserman, Liora Alschuler. Development, implementation, and initial evaluation of a foundational open interoperability standard for oncology treatment planning and summarization. J Am Med Inform Assoc (JAMIA). 2015 May;22(3):577-86

Lucila Ohno-Machado, Zia Agha, Doug Bell, Lisa Dahm, Michele E. Day, Jason N. Doctor, Davera Gabriel, Mini Kahlon, Katherine K. Kim, Michael Hogarth, Michael Matheny, Daniella Meeker, Jonathan Nebeker and the pScanner team. pScanner: Patient-centered SCAlable National Network for Effectiveness Research.  J Am Med Inform Assoc (JAMIA). 2014. Jul-Aug:21(4):621-6.

Elson SL, Hiatt RA, Anton-Culver H, Howell LP, Naeim A, Parker BA, Van’t Veer LJ, Hogarth M, Pierce JP, Duwors RJ, Hajopoulos K, Esserman LJ; The Athena Breast health Network: Developing a rapid learning system in breast cancer prevention, screening, treatment, and care. Breast Cancer Res. Treat. 2013 Jul; 140(2):417-25.

Esserman L J., Barker A D., Woodcock J, Buxton M A, Berry D A, Patterson R, Jolly M K, DeMichele A, Hylton N, Rubin E H, Parkinson D, Wholley D, van’t Veer L, Yee D, Park J, Tripathy D, Perlmutter J, Buetow K, Hogarth M, Gray J, Dilts D M. (December 08, 2012) A Model for Accelerating Identification and Regulatory Approval of Effective Investigational Agents. Cureus 4(12): e76. DOI 10.7759/cureus.76

Yee D, Haddad T, Albain K, Barker A, Benz C, Boughey J, Buxton M, Jo Chien A,Demichele A, Dilts D, Elias A, Haluska P, Hogarth M, Hu A, Hytlon N, Kaplan HG,Kelloff GG, Khan Q, Lang J, Leyland-Jones B, Liu M, Nanda R, Northfelt D, OlopadeOI, Park J, Parker B, Parkinson D, Pearson-White S, Perlmutter J, Pusztai L,Symmans F, Rugo H, Tripathy D, Wallace A, Wholley D, Van't Veer L, Berry DA, Esserman L. Adaptive trials in the neoadjuvant setting: A model to safely tailor care while accelerating drug development. J Clin Oncol. 2012 Dec 20;30(36):4584-6.

Cohen E, Belkora J, Tyler J, Schreiner J, Deering MJ, Grama L, Duggan B, Illi J, Pederson J, Anand A, Teng A, McCreary E, Moore D, Tripathy D, Hogarth M, Lieberman M, Park J, Esserman L. Adoption, acceptability, and accuracy of an online clinical trial matching website for breast cancer. J Med Internet Res. 2012 Jul 11;14(4).

Hogarth M, Hajopoulos K, Young M, Cowles N, Churin J, Hornthal B, Esserman L. The Communication and care plan: A novel approach to patient-centered clinical information systems. J. Biomed Inform. 2010 Oct;43(5 Supple):S6-8.

Yellowlees PM, Marks LS, Hogarth M, Turner S. Standards-based, open-source electronic health record systems: A desirable future for the U.S. health industry. Telemed J E Health, 14(3):284-8. 2008.

Yellowlees PM, Hogarth M, Hilty DM. The importance of distributed broadband networks to academic biomedical research and education programs. Acad Psychiatry. 30(6):451-5. 2006.

Kravitz RL, Neufeld JD, Hogarth MA, Paterniti DA, Dager W, White R. The Long Road from Insight to Implementation: Lessons from a Multi-site Trial of a PDA-Based Warfarin Dose Calculator Advances in Patient Safety: From Research to Implementation. Agency for Healthcare Research and Quality (AHRQ); Feb 2005; 395-409.

Cardiff RD, Rosner A, Hogarth MA, Galvez JJ, Borowsky AD, Gregg JP. Validation of the new challenge for pathology. Toxicologic Pathology, 32 Suppl 1:31-9. 2004.

Elkin PL, Brown SH, Lincoln MJ, Hogarth M, Rector A. A Formal Representation for Messages  Containing Compositional Expressions. International Journal of Medical Informatics (IJMI). 71(2-3):89-102. 2003. (pubmed id: 14519402)

Srinivas PR, Gusfield D, Mason O, Gertz M, Hogarth M, Stone J, Jones EG, Gorin, FA. Semi- automated generation of neuroanatomical terms and acronyms with a comparison between two neuroanatomical terminologies. Neuroinformatics Journal, 1(2):177-192. 2003.

Howell LP, Hogarth M, Anders TF. Implementing a Mission-Based Reporting System at an Academic Health Center. Academic Medicine. 78(6):645-51. (pubmed id: 12805050). 2003.

Howell LP, Hogarth M, Anders TF.  Creating a Mission-based Reporting System at an academic healthcenter. Acad Med. 77(2):130-8. (pubmed id: 11841972). 2002.

Gorin FA, Hogarth MA, Gertz M.  The challenges and the rewards of integrating diverse neuroscience information. Neuroscientist. 7(1):18-27. (pubmed id: 11486341). 2001

Zhou J, Hogarth MA, Walters RF, Green R, Nesbitt TS, Hybrid System for Telepathology. Human  Pathology 31(7): 829-833, (pubmed id: 10923920). 2000.

Hogarth MA. “Java Servlets: A Novel Framework for Web Programming”. Healthcare Intranet Report. 1998.

Hogarth MA. Newsgroups in Medicine, Informática, (Portuguese). 1998.

Hogarth M, Sabbatini R. “Informática e a Medicina do Século 21”. Informática Médica Vol 1, Issue 2. 1998.

Hogarth M. “Informática médica: um pouco de história”. Informática Médica. 1998. Vol 1, Issue 5 (http://www.epub.org.br/informaticamedica/n0105/hogarth.htm)

Hogarth MA. “Informatics and Computing: The Internet at the Crossroads”. Developer.com Tech Focus. 1998.

Hogarth MA. “Web E-Mail: Extending POP Mail to Nomadic Users”. Healthcare Intranet Report. 1998.

Hogarth MA. A Medical Publishing Tool for the Information Age, Healthcare Intranet Report. 1998.

Hogarth MA, Bencken V. Web Publishing Policies: The UC-Davis Health System Experience, Healthcare Intranet Report. 1998.

Hogarth MA, Bencken V. Publishing on the Web: Who is responsible for the information anyway?, Healthcare Intranet Report. 1998.